Problems after being infected by malware

Did you get rid of the Jetico drivers also?
And can you please repost a GMER report I’d like to compare it to the previous result…

Here is new log

GMER 1.0.15.15279 - http://www.gmer.net Rootkit quick scan 2009-12-14 18:15:55 Windows 5.1.2600 Service Pack 3 Running: msil379d.exe; Driver: C:\DOCUME~1\ADMINI~1\CONFIG~1\Temp\uxtdypog.sys

---- Disk sectors - GMER 1.0.15 ----

Disk \Device\Harddisk0\DR0 sector 01: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 02: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 03: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 04: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 05: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 06: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 07: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 08: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 09: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 10: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 11: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 12: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 13: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 14: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 15: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 16: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 17: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 18: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 19: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 20: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 21: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 22: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 23: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 24: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 25: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 26: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 27: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 28: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 29: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 30: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 31: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 32: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 33: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 34: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 35: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 36: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 37: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 38: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 39: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 40: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 41: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 42: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 43: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 44: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 45: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 46: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 47: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 48: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 49: rootkit-like behavior; copy of MBR
Disk \Device\Harddisk0\DR0 sector 50: copy of MBR
Disk \Device\Harddisk0\DR0 sector 51: copy of MBR
Disk \Device\Harddisk0\DR0 sector 52: copy of MBR
Disk \Device\Harddisk0\DR0 sector 53: copy of MBR
Disk \Device\Harddisk0\DR0 sector 54: copy of MBR
Disk \Device\Harddisk0\DR0 sector 55: copy of MBR
Disk \Device\Harddisk0\DR0 sector 56: copy of MBR
Disk \Device\Harddisk0\DR0 sector 57: copy of MBR
Disk \Device\Harddisk0\DR0 sector 58: copy of MBR
Disk \Device\Harddisk0\DR0 sector 59: copy of MBR
Disk \Device\Harddisk0\DR0 sector 60: copy of MBR
Disk \Device\Harddisk0\DR0 sector 61: copy of MBR
Disk \Device\Harddisk0\DR0 sector 62: copy of MBR
Disk \Device\Harddisk0\DR0 sector 63: copy of MBR

---- System - GMER 1.0.15 ----

SSDT spfy.sys ZwEnumerateKey [0xBA6CDDA4]
SSDT spfy.sys ZwEnumerateValueKey [0xBA6CE132]

---- Devices - GMER 1.0.15 ----

Device \FileSystem\Ntfs \Ntfs 89A4B1F8

AttachedDevice \Driver\Tcpip \Device\Ip cmdhlp.sys (COMODO Internet Security Helper Driver/COMODO)
AttachedDevice \Driver\Tcpip \Device\Tcp cmdhlp.sys (COMODO Internet Security Helper Driver/COMODO)
AttachedDevice \Driver\Tcpip \Device\Udp cmdhlp.sys (COMODO Internet Security Helper Driver/COMODO)
AttachedDevice \Driver\Tcpip \Device\RawIp cmdhlp.sys (COMODO Internet Security Helper Driver/COMODO)

---- EOF - GMER 1.0.15 ----

Strange, there should be many more entries regarding CIS…
Can you run CIS diagnostics on the Misc page and see what turns up?

And I’m not sure if spfy.sys is a legitimate driver, can you run sigcheck over it without parameters and see what turns up?

You could try and fix your MBR with the XP recovery console and use FIXMBR
Source: What are the system recovery options in Windows? - Microsoft Support

FIXMBR fixmbr device name Use this command to repair the MBR of the boot partition. In the command syntax, device name is an optional device name that specifies the device that requires a new MBR. Use this command if a virus has damaged the MBR and Windows cannot start.

Warning This command can damage your partition tables if a virus is present or if a hardware problem exists. If you use this command, you may create inaccessible partitions. We recommend that you run antivirus software before you use this command.

You can obtain the device name from the output of the map command. If you do not specify a device name, the MBR of the boot device is repaired, for example:
fixmbr \device\harddisk2
If the fixmbr command detects an invalid or non-standard partition table signature, fixmbr command prompts you for permission before it rewrites the MBR. The fixmbr command is supported only on x86-based computers.

The diagnosis says that there is no problem with my installation of cis. I did not find the location of this driver on my machine.

Can you boot in Safe-Mode and see if you can find it, and if that doesn’t work can you try to boot in the recovery cd/dvd and see if you can read it then, I’m afraid there are still active traces of the rootkit on your system, CIS should have much more entries on the GMER report.