Do I need to worry about this ?

I was looking around for something to put an OS install disk onto a USB key and ran into somthing called BetterInstaller. It modifies some questionable keys, I’m concerned about the
HKLM\SOFTWARE\MICROSOFT\SystemCertificates\ stuff. Do I need to worry about this ?
Thanks in advance,
Bruce.

2012-09-30 10:45:42 C:\Documents and Settings\bruce\My Documents\Downloads\Wintoflash_downloader_by_betterinstaller.exe Modify Key, Suspicious HKLM\SYSTEM\ControlSet001\Control\SESSION MANAGER
2012-09-30 10:45:47 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify File C:\WINDOWS\Debug\UserMode\ChkAcc.log
2012-09-30 10:45:48 C:\Documents and Settings\bruce\My Documents\Downloads\Wintoflash_downloader_by_betterinstaller.exe Modify Key, Suspicious HKLM\SYSTEM\ControlSet001\Control\SESSION MANAGER\PendingFileRenameOperations
2012-09-30 10:45:53 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify File C:\WINDOWS\Debug\UserMode\ChkAcc.bak
2012-09-30 10:45:55 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\Windows\CurrentVersion\Internet Settings\Connections
2012-09-30 10:45:58 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\Windows\CurrentVersion\Internet Settings\ProxyEnable
2012-09-30 10:45:59 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\Windows\CurrentVersion\Internet Settings\ProxyServer
2012-09-30 10:45:59 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\Windows\CurrentVersion\Internet Settings\ProxyOverride
2012-09-30 10:46:00 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\Windows\CurrentVersion\Internet Settings\Connections\SavedLegacySettings
2012-09-30 10:46:00 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Tcpip\Parameters
2012-09-30 10:46:02 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe DNS/RPC Client Access
2012-09-30 10:46:03 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Eventlog\Application\ESENT
2012-09-30 10:46:04 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Eventlog\Application\ESENT\EventMessageFile
2012-09-30 10:46:04 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Eventlog\Application\ESENT\CategoryMessageFile
2012-09-30 10:46:05 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Eventlog\Application\ESENT\CategoryCount
2012-09-30 10:46:06 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Services\Eventlog\Application\ESENT\TypesSupported
2012-09-30 10:46:12 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SYSTEM\ControlSet001\Control\SecurityProviders\SCHANNEL
2012-09-30 10:46:14 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\SystemCertificates\Root
2012-09-30 10:46:16 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\SystemCertificates\Root\Certificates
2012-09-30 10:46:18 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\SystemCertificates\Root\CRLs
2012-09-30 10:46:19 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKUS\S-1-5-21-2890045335-886734956-365881250-1003\Software\Microsoft\SystemCertificates\Root\CTLs
2012-09-30 10:46:20 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\ROOT
2012-09-30 10:46:21 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\ROOT\Certificates
2012-09-30 10:46:21 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\ROOT\CRLs
2012-09-30 10:46:23 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\ROOT\CTLs
2012-09-30 10:46:23 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\AuthRoot
2012-09-30 10:46:24 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\AuthRoot\Certificates
2012-09-30 10:46:24 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\AuthRoot\CRLs
2012-09-30 10:46:24 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\MICROSOFT\SystemCertificates\AuthRoot\CTLs
2012-09-30 10:46:25 C:\Documents and Settings\bruce\Local Settings\Temp\BetterInstaller.exe Modify Key HKLM\SOFTWARE\Policies\Microsoft\SystemCertificates\root

Did you load a program from a reputated source, after you read about it on a reputated source?

Everything else is dangerous.
ESPECIALLY if you are going to create a “basic installation” which should not be altered by malware.

So far,
YES, you should be worried.

To ensure that your computer is not infected please follow the advice in an article I wrote about How to Know If Your Computer Is Infected. Make sure you take the time to examine any files flagged as FLS.Unknown and let us know the results.

Thanks.

I’ve done a secure erasure of my HD and rebuilt my machine. Here’s what I sent to MS and google malware reporting :

goto http://wintoflash.com/download/en/
select first download link :
BetterInstaller (fastest partner download): Download WinToFlash with BetterInstaller (En)
export registry before.reg
run installer (machine will be infected)
export registry after.reg
windiff exported reg files.

I still have a VM which is infected for reference.
I have the files :
Wintoflash_downloader_by_betterinstaller.exe which downloads the application I was looking for and also the malware.
novicorp wintoflash 0.7.0054 beta.zip which is the file I was after

I also have exported reg files but I can’t seem to get windiff to put meaningful data on the clipboard to post - when I cut and paste, I loose the arrows indicating which file that particular line belonged to - suggestions please.
Please tell me how I can submit the files for analysis. Though, as I said I think the first one is the problem and it downloads the malware rather than being the malware.
Bruce.

Betterintaller is a form of tracking software for installers:

BetterInstaller.exe is main executable for Better Installer Host application from Somoto Ltd. This application is monetizing system for installation process - any company issuing their software can use this application to watch, check, gather statistics etc. from installations of their software. Check more on http://betterinstaller.somotoinc.com/
Source

If that is not to your liking simply download WinToFlash without BetterInstaller from the WinFoFlash download pages.