My suggestion is a pop-up blocker.
The pop-up blocker in Opera 12.15 is wonderful, it blocks all pop-ups I've ever seen and then also easily lets me open those pop-ups, if I want, by clicking the notification.
So my suggestion is a pop-up blocker in PrivDog that blocks all these pop-ups however also displays a message in the top right that a pop-up has been blocked, you should be able to click something like "Open pop-up.", "Exclude this site." and "Don't notify me on this site again." The notification should also have a cross to close the notification without any action and it should not be visible for too long however it should not fade away if you hover over it. The notification could also say where the pop-up leads, the url.
You should be able to turn off the pop-up module in the settings of PrivDog and the pop-up blocker should also have its own exclusion list in which you can add for example comodo forums or your bank etc, just sites you trust with opening pop-ups.
If you have any additional ideas regarding this then please leave a comment.
Sanya IV Litvyak.