You just described your problem but gave absolutely no useful information .
Please provide required information like the malware name, it's position, possible source, nature of infection. How do you know that it is a malware ? Did any of the above tools named it as malware ? What was the name given ?
If you want to manually remove a malware, you need to follow a specific strategy. This strategy is not the same if you want to remove a file infector or if you want to remove something like ZAccess.
So we can't answer your question if we don't know which malware is detected.